EuPathDB Scientific Working Group
EuPathDB is pleased to announce the members of the scientific working group (SWG). The SWG provides EuPathDB with scientific oversight and guidance. Members of the SWG also review the driving...
View ArticlePlasmoDB 6.4 released
We are pleased to announce the release of PlasmoDB 6.4 This release of PlasmoDB contains the following new datasets and features: New Data:PiggyBac insertion sites in P. falciparum (NF54) from Balu...
View ArticlePlasmoDB 6.5 released
We are pleased to announce the release of PlasmoDB 6.5 This release of PlasmoDB contains the following new datasets:A proteomics dataset for P. falciparum from 42 and 48 hrs post infection kindly...
View ArticlePlasmoDB 7.0 Released
We are pleased to announce the release of PlasmoDB 7.0 This release of PlasmoDB contains the following new datasets and features: New Data:Updated sequence and annotation for Plasmodiumfalciparum, P....
View ArticleDriving Biological Projects awarded
We are pleased to report that the following Driving Biological Projects (DBPs) have been awarded in connection with the EuPathDB Bioinformatics Resource Center (BRC):The Toxoplasma oocyst transcriptome...
View ArticlePlasmoDB 7.1 Released
We are pleased to announce the release of PlasmoDB 7.1 This release of PlasmoDB contains the following new data: P. falciparum blood stage proteomics data (trophozoites and early and mature...
View ArticlePlasmodium genome sequencing project update
Following extensive discussion with the malaria research community, the list of Plasmodium genome sequencing projects supported by the US National Institutes of Allergy and Infectious Diseases (NIAID)...
View ArticlePlasmoDB 7.2 Released
We are pleased to announce the release of PlasmoDB 7.2 New data:P. falciparum mRNA half-life data intraerythrocytic developmental cycle (Shock et. al.) is now available as mRNA expression and half-life...
View ArticlePlasmoDB 8.0 Released
We are pleased to announce the release of PlasmoDB 8.0 New data:Sequence and annotation of the P. falciparum IT strainproduced by the Parasite Genomics Group at the Wellcome Trust Sanger Institute with...
View ArticleA new sequence version of P. falciparum 3D7 is now available on GeneDB!
Since the publication of the genome in 2002, work has continued at the Sanger Institute to produce a single base-perfect P. falciparum reference genome. This new sequence version is an upgrade from...
View ArticleVerson 2 of P. falciparum IT is now available on GeneDB!
A new assembly of the P. falciparum IT genome is now available, replacing the version 1 sequence that has been available via PlasmoDB (since release 8.0) and the Sanger FTP site. The version 1...
View ArticleVersion 1 of P. yoelii yoelii YM is now available on GeneDB!
A first-pass assembly and annotation of P. yoelii yoelii YM is now publicly available on GeneDB. The assembly was made using short-fragment Illumina reads and scaffolded with 454 paired-reads from a...
View ArticlePlasmoDB 8.2 Released
We are pleased to announce the release of PlasmoDB 8.2 New data in release 8.1 and 8.2:P. vivax Schizont stage proteome from human blood samples (Roobsoong et. al.). This data can be searched by...
View ArticlePlasmoDB 9.0 Released
plasmo05_12We are pleased to announce the release of PlasmoDB 9.0 This is a major release of PlasmoDB which constitutes a complete rebuild of the database. This means that all genomes, data and...
View ArticlePlasmoDB 9.1 Released
plasmo08_12We are pleased to announce the release of PlasmoDB 9.1New Data in this release:P. falciparum schizont phosphoproteomic data (Solyakov et al.). This data can be searched by choosing...
View ArticleDEVELOPMENT OF A MOLECULAR BARCODE FOR PLASMODIUM VIVAX
The Harvard School of Public Health and Broad Institute including Professors Sarah Volkman, Manoj Duraisingh, Daniel Hartl, Daniel Neafsey, Pardis Sabeti, and Dyann Wirth with funding support from the...
View ArticleEuPathDB Annual Workshop
We are pleased to announce the 8th annual EuPathDB workshop to be held in Athens, Georgia, USA from June 2-5, 2013. Please note that the workshop expenses, in addition to room and board costs are...
View ArticlePlasmoDB 9.3 Released
We are pleased to announce the release of PlasmoDB 9.3New data in this release: Transcriptional variation across subclonal strains derived from P. falciparum strains 3D7, 7G8, D10 and HB3...
View ArticlePlasmoDB 10.0 Released
We are pleased to announce the release of PlasmoDB 10.0New data in this release: The following genomes have been updated. Additional information about all genomes may be viewed in the Dataset section...
View ArticleEuPathDB Annual Workshop
We are pleased to announce the 9th annual EuPathDB workshop to be held in Athens, Georgia, USA from June 15 to Wednesday, June 18, 2014. Please note that the workshop expenses, in addition to room...
View ArticlePlasmoDB 11.0 Released
We are pleased to announce the release of PlasmoDB 11.0New data in this release:Serum antibody levels determined by protein microarray (Crompton et al.). For full attribution and available searches...
View ArticlePlasmoDB 11.1 Released
We are pleased to announce the release of PlasmoDB 11.1New data in this release:ChIP-seq data from a EuPathDB-funded project:Genomic position of nucleosome binding inP. falciparum 3D7 was assayed over...
View ArticlePlasmoDB 12.0 Released
We are pleased to announce the release of PlasmoDB 12.0New data in this release:P. falciparum phosphoproteomic data:Data was generated from tightly synchronized ring, trophozoites, and schizonts (Pease...
View ArticlePlasmoDB 13.0 Released
We are pleased to announce the release of PlasmoDB 13.0New data in this release:The data set title below links to a full description and list of associated searches and GBrowse tracks....
View ArticleLetter to the EuPathDB Community
Dear colleagues - We are writing to provide an update on the Eukaryotic Pathogen Genomics Resource (EuPathDB.org), which many hundreds of laboratories wrote to support in connection with our...
View ArticlePlasmoDB 24 Released
PlasmoDB_4_15_newsWe are pleased to announce the release of PlasmoDB 24All EuPathDB release numbers have been synchronized to help us more efficiently manage our expanding number of databases. As of...
View ArticlePlasmoDB 25 Released
We are pleased to announce the release of PlasmoDB 25New data in this release The data set title below links to a full description and list of associated searches and GBrowse tracks. Proteomics...
View ArticlePlasmoDB 26 Released
We are pleased to announce the release of PlasmoDB 26New data in this release The data set title below links to a full description and list of associated searches and GBrowse tracks. Genome Sequence...
View ArticlePlasmoDB 27 Released
We are pleased to announce the release of PlasmoDB 27New data in this release The data set title below links to a full description and list of associated searches and GBrowse tracks. Transcriptomics:...
View ArticlePlasmoDB 28 Released
We are pleased to announce the release of PlasmoDB 28New data in this release The data set title below links to a full description and list of associated searches and GBrowse tracks. Transcriptomics:...
View ArticlePlasmoDB 29 Released
We are pleased to announce the release of PlasmoDB 29PlasmoDB 29 PlasmoDB 29 represents extensive efforts to improve navigation and data accessibility on record pages, provide consistent verbiage and...
View ArticlePlasmoDB 30 Released
We are pleased to announce the release of PlasmoDB 30New Data in Release 30Genome Sequence and Annotation:Plasmodium coatneyi strain Hackeri– Updated to the re-sequenced and re-annotated GenBank...
View ArticleEuPathDB is Hiring
The Eukaryotic Pathogen Database resource (EuPathDB.org)is a large, multi-institution project that develops scientific data-mining websites used by researchers worldwide to study selected microbial...
View ArticlePlasmoDB 31 Released
We are pleased to announce the release of PlasmoDB 31No New data in this release Note: Our bimonthly database releases incorporate new data and correct old data when necessary. Changes in annotation...
View ArticlePlasmoDB 32 Released
We are pleased to announce the release of PlasmoDB 32New Data in Release 32Genome Sequence and Annotation:P. gallinaceum 8A– first release of this genome in PlasmoDB (version from 9th of January 2017)....
View ArticlePlasmoDB 33 Released
We are pleased to announce the release of PlasmoDB 33New data in this releaseChromatin immunoprecipitation and sequencing (ChIP-seq):Ap2-G2 ChIP-seq– AP2-G2 target genes predicted by ChIP-sequencing...
View ArticleInterpreting RNA Seq expression values
In the transcriptomics section of gene pages, expression graphs display FPKM or RPKM values determined from uniquely aligned reads (those that align to one location only). The coverage section shows...
View ArticlePlasmoDB 34 Released
We are pleased to announce the release of PlasmoDB 34New data in this releaseMicroarray:Intraerythrocytic cycle expression profile: in vitro and ex vivo (Pkno PK1(A+))– Microarray expression profiles...
View ArticlePlasmoDB 35 Released
We are pleased to announce the release of PlasmoDB 35New data in this releaseGenome Sequence and AnnotationPlasmodium knowlesi strain Malayan Strain Pk1 A – PacBio assembly of a Plasmodium knowlesi...
View ArticlePlasmoDB 36 Released
We are pleased to announce the release of PlasmoDB 36New data in this releaseGenome Sequence and Annotation These annotated genomes appear for the first time in PlasmoDB. Plasmodium adleri strain G01 –...
View ArticlePlasmoDB 37 Released
We are pleased to announce the release of PlasmoDB 37New data in PlasmoDB 37RNA SequenceTranscriptome of P cynomolgi during 100-day infection in M mulatta– P. cynomolgi transcriptome of whole blood and...
View ArticlePlasmoDB 38 Released
We are pleased to announce the release of PlasmoDB 38Announcement: Starting with PlasmoDB 38, P. vivax P01 replaces P. vivax Sal-1 as reference for all P. vivax data in PlasmoDB. Functional genomics...
View ArticlePlasmoDB 39 Released
We are pleased to announce the release of PlasmoDB 39New data in PlasmoDB 39Whole genome sequencing reads for SNP and CNV analysisAligned genomic sequence reads - strain P01– Auburn et al.New features...
View ArticlePlasmoDB 40 Released
We are pleased to announce the release of PlasmoDB 40. PlasmoDB 40 represents a software and features release.New features in PlasmoDB 40New Sense/Antisense RNA seq searchRNA Seq searches— A new...
View ArticlePlasmoDB 41 Released
We are pleased to announce the release of PlasmoDB 41New data in PlasmoDB 41Genome sequence and annotation These annotated genomes analyzed in Otto et al. are integrated into PlasmoDB: Plasmodium...
View ArticlePlasmoDB 42 Released
We are pleased to announce the release of PlasmoDB 42Release 42 Webinar Join us on March 20, 2019 10:00-11:00 AM EDT for our Release 42 Highlights webinar where we will discuss and demonstrate new...
View ArticlePlasmoDB 43 Released
We are pleased to announce the release of PlasmoDB 43Release 43 Webinar Join us on May 15th at 10:00 am (EST) for our Release 43 Highlights webinar where we will discuss and demonstrate new features...
View ArticlePlasmoDB 44 Released
We are pleased to announce the release of PlasmoDB 44Release 44 Webinar Join us on Tuesday July 16th at 10:00 am (EST) for our Release 44 Highlights webinar where we will discuss and demonstrate new...
View ArticlePlasmoDB 45 Released
We are pleased to announce the release of PlasmoDB 45Release 45 Webinar Join us on September 11, 2019 at 10:00 am (EST) for our Release 45 Highlights webinar where we will discuss and demonstrate new...
View ArticlePlasmoDB 46 Released
We are pleased to announce the release of PlasmoDB 46Release 46 Webinar Join us on December 3, 2019 at 10:00 am (EST) for our Release 46 Highlights webinar where we will discuss and demonstrate new...
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